3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
AAGAAG*CCACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_063 not in the Motif Atlas
Homologous match to IL_5J7L_063
Geometric discrepancy: 0.0863
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

9N2B|1|16|A|1430
9N2B|1|16|A|1431
9N2B|1|16|G|1432
9N2B|1|16|A|1433
9N2B|1|16|A|1434
9N2B|1|16|G|1435
*
9N2B|1|16|C|1466
9N2B|1|16|C|1467
9N2B|1|16|A|1468
9N2B|1|16|C|1469
9N2B|1|16|U|1470

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 23
Large subunit ribosomal RNA; LSU rRNA
Chain LN
50S ribosomal protein L14
Chain LS
50S ribosomal protein L19
Chain ST
30S ribosomal protein S20

Coloring options:


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