IL_9N2B_104

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9N2B|1|23|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_104 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0639

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9N2B|1|23|G|1031
9N2B|1|23|A|1032
9N2B|1|23|U|1033
9N2B|1|23|G|1034
*
9N2B|1|23|C|1121
9N2B|1|23|G|1122
9N2B|1|23|C|1123

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain LP

50S ribosomal protein L16

Chain Lj

50S ribosomal protein L36