IL_9N2B_134

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9N2B|1|23|A|1801, 9N2B|1|23|C|1816, 9N2B|1|23|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_134 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0542

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9N2B|1|23|U|1798
9N2B|1|23|G|1799
9N2B|1|23|C|1800
9N2B|1|23|A|1801
9N2B|1|23|A|1802
9N2B|1|23|A|1803
9N2B|1|23|C|1804
*
9N2B|1|23|G|1813
9N2B|1|23|G|1814
9N2B|1|23|A|1815
9N2B|1|23|C|1816
9N2B|1|23|G|1817
9N2B|1|23|U|1818
9N2B|1|23|A|1819
9N2B|1|23|U|1820
9N2B|1|23|A|1821

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain LB

50S ribosomal protein L2