IL_9N2B_162

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9N2B|1|23|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_162 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.065

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9N2B|1|23|C|2636
9N2B|1|23|U|2637
9N2B|1|23|G|2638
9N2B|1|23|A|2639
9N2B|1|23|G|2640
*
9N2B|1|23|C|2774
9N2B|1|23|G|2775
9N2B|1|23|A|2776
9N2B|1|23|G|2777
9N2B|1|23|A|2778
9N2B|1|23|U|2779
9N2B|1|23|G|2780
9N2B|1|23|A|2781
9N2B|1|23|G|2782

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LM

50S ribosomal protein L13