IL_9N2B_164

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

9N2B|1|23|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_164 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.0927

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9N2B|1|23|U|2680
9N2B|1|23|C|2681
9N2B|1|23|A|2682
9N2B|1|23|C|2683
9N2B|1|23|U|2684
*
9N2B|1|23|A|2725
9N2B|1|23|A|2726
9N2B|1|23|A|2727

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LN

50S ribosomal protein L14

Chain LQ

50S ribosomal protein L17

Chain LS

50S ribosomal protein L19