IL_9N2C_014
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 9N2C|1|16|U|244, 9N2C|1|16|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2C_014 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.1105
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9N2C|1|16|G|242
9N2C|1|16|A|243
9N2C|1|16|U|244
9N2C|1|16|U|245
9N2C|1|16|A|246
9N2C|1|16|G|247
*
9N2C|1|16|C|277
9N2C|1|16|G|278
9N2C|1|16|A|279
9N2C|1|16|C|280
9N2C|1|16|G|281
9N2C|1|16|A|282
9N2C|1|16|U|283
9N2C|1|16|C|284
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnH operon
Nearby chains
- Chain SL
- Small ribosomal subunit protein uS12
- Chain SQ
- 30S ribosomal protein S17
Coloring options: