IL_9N2C_030
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 9N2C|1|16|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2C_030 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.0833
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9N2C|1|16|U|605
9N2C|1|16|G|606
9N2C|1|16|A|607
9N2C|1|16|A|608
9N2C|1|16|A|609
9N2C|1|16|U|610
9N2C|1|16|C|611
9N2C|1|16|C|612
*
9N2C|1|16|G|628
9N2C|1|16|A|629
9N2C|1|16|A|630
9N2C|1|16|C|631
9N2C|1|16|U|632
9N2C|1|16|G|633
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnH operon
Nearby chains
- Chain SD
- 30S ribosomal protein S4
- Chain SH
- 30S ribosomal protein S8
- Chain SP
- 30S ribosomal protein S16
- Chain SQ
- 30S ribosomal protein S17
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