IL_9N2C_167
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9N2C|1|23|U|2689, 9N2C|1|23|U|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2C_167 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.0575
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9N2C|1|23|U|2687
9N2C|1|23|G|2688
9N2C|1|23|U|2689
9N2C|1|23|U|2690
9N2C|1|23|C|2691
*
9N2C|1|23|G|2718
9N2C|1|23|G|2719
9N2C|1|23|U|2720
9N2C|1|23|A|2721
9N2C|1|23|G|2722
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LC
- 50S ribosomal protein L3
- Chain LQ
- 50S ribosomal protein L17
- Chain LS
- 50S ribosomal protein L19
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