IL_9N3I_001

3D structure

PDB id

9N3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9N3I|1|A|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N3I_001 not in the Motif Atlas

Geometric match to IL_8B0X_107

Geometric discrepancy: 0.1129

The information below is about IL_8B0X_107

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9N3I|1|A|C|3
9N3I|1|A|G|4
9N3I|1|A|U|5
9N3I|1|A|U|6
9N3I|1|A|G|7
9N3I|1|A|A|8
9N3I|1|A|A|9
9N3I|1|A|G|10
*
9N3I|1|A|U|135
9N3I|1|A|G|136
9N3I|1|A|G|137
9N3I|1|A|A|138
9N3I|1|A|G|139

Current chains

Chain A

Glycine Riboswitch

Nearby chains