IL_9N3I_009

3D structure

PDB id

9N3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAA*UC

Length

5 nucleotides

Bulged bases

9N3I|1|A|A|154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N3I_009 not in the Motif Atlas

Geometric match to IL_8XZL_003

Geometric discrepancy: 0.1858

The information below is about IL_8XZL_003

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9N3I|1|A|G|153
9N3I|1|A|A|154
9N3I|1|A|A|155
*
9N3I|1|A|U|168
9N3I|1|A|C|169

Current chains

Chain A

Glycine Riboswitch

Nearby chains