IL_9N6Z_021

3D structure

PDB id

9N6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State D

Experimental method

ELECTRON MICROSCOPY

Resolution

4.74 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

9N6Z|1|L1|U|313, 9N6Z|1|L1|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N6Z_021 not in the Motif Atlas

Homologous match to IL_9PN5_159

Geometric discrepancy: 0.2258

The information below is about IL_9PN5_159

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.7

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

8

Unit IDs

9N6Z|1|L1|U|311
9N6Z|1|L1|A|312
9N6Z|1|L1|U|313
9N6Z|1|L1|C|314
9N6Z|1|L1|A|315
9N6Z|1|L1|A|316
*
9N6Z|1|L1|U|348
9N6Z|1|L1|U|349
9N6Z|1|L1|U|350
9N6Z|1|L1|C|351
9N6Z|1|L1|A|352
9N6Z|1|L1|A|353
9N6Z|1|L1|C|354
9N6Z|1|L1|G|355

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L8

40S ribosomal protein S8-A

Chain LD

40S ribosomal protein S11-A

Chain NK

KRR1 small subunit processome component