IL_9N70_004

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

9N70|1|L1|A|468

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N70_004 not in the Motif Atlas

Homologous match to IL_9PN5_144

Geometric discrepancy: 0.2408

The information below is about IL_9PN5_144

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35092.2

Basepair signature

cWW-cWW-tSH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9N70|1|L1|U|37
9N70|1|L1|C|38
9N70|1|L1|A|39
9N70|1|L1|A|40
9N70|1|L1|A|41
*
9N70|1|L1|U|466
9N70|1|L1|G|467
9N70|1|L1|A|468
9N70|1|L1|C|469
9N70|1|L1|A|470
9N70|1|L1|A|471

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9-A

Chain SI

Ribosome biogenesis protein BMS1