IL_9N70_048

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N70_048 not in the Motif Atlas

Homologous match to IL_9PN5_198

Geometric discrepancy: 0.2842

The information below is about IL_9PN5_198

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9N70|1|L1|C|1173
9N70|1|L1|C|1174
9N70|1|L1|U|1175
*
9N70|1|L1|G|1464
9N70|1|L1|C|1465
9N70|1|L1|G|1466

Current chains

Chain L1

18S rRNA

Nearby chains

Chain SI

Ribosome biogenesis protein BMS1

Chain SM

U3 small nucleolar ribonucleoprotein protein IMP4