IL_9N70_052

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N70_052 not in the Motif Atlas

Homologous match to IL_9PN5_224

Geometric discrepancy: 0.1246

The information below is about IL_9PN5_224

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9N70|1|L1|U|1650
9N70|1|L1|A|1651
9N70|1|L1|C|1652
*
9N70|1|L1|G|1748
9N70|1|L1|A|1749
9N70|1|L1|A|1750

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LQ

U3 small nucleolar RNA-associated protein 12