IL_9N9J_048

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N9J_048 not in the Motif Atlas

Homologous match to IL_9PN5_026

Geometric discrepancy: 0.1099

The information below is about IL_9PN5_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9N9J|1|L5|C|1520
9N9J|1|L5|C|1521
9N9J|1|L5|G|1522
*
9N9J|1|L5|C|1655
9N9J|1|L5|U|1656
9N9J|1|L5|G|1657

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain La

60S ribosomal protein L27a