IL_9N9J_107

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9N9J|1|L5|A|3663, 9N9J|1|L5|U|3679, 9N9J|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|C|3660
9N9J|1|L5|G|3661
9N9J|1|L5|A|3662
9N9J|1|L5|A|3663
9N9J|1|L5|G|3664
9N9J|1|L5|G|3665
*
9N9J|1|L5|U|3677
9N9J|1|L5|G|3678
9N9J|1|L5|U|3679
9N9J|1|L5|U|3680
9N9J|1|L5|G|3681
9N9J|1|L5|A|3682
9N9J|1|L5|C|3683
9N9J|1|L5|G|3684

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

Large ribosomal subunit protein eL43