IL_9NDP_052

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9NDP|1|5|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_052 not in the Motif Atlas

Homologous match to IL_8GLP_053

Geometric discrepancy: 0.0797

The information below is about IL_8GLP_053

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9NDP|1|5|C|1467
9NDP|1|5|C|1468
*
9NDP|1|5|G|1496
9NDP|1|5|A|1497
9NDP|1|5|G|1498

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

Ribosomal protein L18

Chain a

60S ribosomal protein L27a

Chain b

Large ribosomal subunit protein eL29