IL_9NDP_059

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

9NDP|1|5|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_059 not in the Motif Atlas

Homologous match to IL_8GLP_061

Geometric discrepancy: 0.1084

The information below is about IL_8GLP_061

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9NDP|1|5|C|1590
9NDP|1|5|U|1591
9NDP|1|5|G|1592
*
9NDP|1|5|C|1603
9NDP|1|5|G|1604

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain NB

Myristoylated alanine-rich C-kinase substrate,X-box-binding protein 1, luminal form

Chain j

Ribosomal protein L37