IL_9NDP_070

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

9NDP|1|5|C|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_070 not in the Motif Atlas

Geometric match to IL_8DP3_001

Geometric discrepancy: 0.3812

The information below is about IL_8DP3_001

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9NDP|1|5|G|1753
9NDP|1|5|U|1754
9NDP|1|5|C|1755
9NDP|1|5|U|1756
*
9NDP|1|5|A|1776
9NDP|1|5|C|1777

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL18