IL_9NDP_081
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 9NDP|1|5|A|1960
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_081 not in the Motif Atlas
- Homologous match to IL_8GLP_082
- Geometric discrepancy: 0.3734
- The information below is about IL_8GLP_082
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.4
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
9NDP|1|5|U|1957
9NDP|1|5|A|1958
9NDP|1|5|U|1959
9NDP|1|5|A|1960
9NDP|1|5|G|1961
9NDP|1|5|A|1962
9NDP|1|5|C|1963
9NDP|1|5|A|1964
9NDP|1|5|G|1965
*
9NDP|1|5|C|2022
9NDP|1|5|C|2023
9NDP|1|5|G|2024
9NDP|1|5|A|2025
9NDP|1|5|A|2026
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
- Chain s
- 60S acidic ribosomal protein P0
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