IL_9NDP_082

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9NDP|1|5|A|2002, 9NDP|1|5|G|2003

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_082 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.2805

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

9NDP|1|5|G|2001
9NDP|1|5|A|2002
9NDP|1|5|G|2003
9NDP|1|5|U|2004
9NDP|1|5|G|2005
*
9NDP|1|5|C|2014
9NDP|1|5|U|2015
9NDP|1|5|C|2016

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

60S ribosomal protein L12