IL_9NDP_106
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 9NDP|1|5|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_106 not in the Motif Atlas
- Homologous match to IL_8GLP_108
- Geometric discrepancy: 0.0723
- The information below is about IL_8GLP_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.3
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9NDP|1|5|C|2867
9NDP|1|5|G|2868
9NDP|1|5|U|2869
9NDP|1|5|A|2870
9NDP|1|5|A|2871
9NDP|1|5|C|2872
*
9NDP|1|5|G|2877
9NDP|1|5|G|2878
9NDP|1|5|A|2879
9NDP|1|5|U|2880
9NDP|1|5|A|2881
9NDP|1|5|A|2882
9NDP|1|5|G|2883
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eL41
- Chain p
- eL43
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