IL_9NDP_119
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GAA*UACC
- Length
- 7 nucleotides
- Bulged bases
- 9NDP|1|5|A|3901, 9NDP|1|5|C|4560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_119 not in the Motif Atlas
- Homologous match to IL_8GLP_129
- Geometric discrepancy: 0.0987
- The information below is about IL_8GLP_129
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80025.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 9
Unit IDs
9NDP|1|5|G|3900
9NDP|1|5|A|3901
9NDP|1|5|A|3902
*
9NDP|1|5|U|4558
9NDP|1|5|A|4559
9NDP|1|5|C|4560
9NDP|1|5|C|4561
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain NB
- Myristoylated alanine-rich C-kinase substrate,X-box-binding protein 1, luminal form
- Chain P
- Large ribosomal subunit protein uL22
Coloring options: