IL_9NDP_144

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9NDP|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_144 not in the Motif Atlas

Homologous match to IL_8GLP_158

Geometric discrepancy: 0.1718

The information below is about IL_8GLP_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46211.1

Basepair signature

cWW-tWW-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9NDP|1|5|C|4582
9NDP|1|5|C|4583
9NDP|1|5|A|4584
9NDP|1|5|U|4585
*
9NDP|1|5|A|4717
9NDP|1|5|G|4718
9NDP|1|5|G|4719
9NDP|1|5|C|4720
9NDP|1|5|G|4721

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13