IL_9NDP_169
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_169 not in the Motif Atlas
- Geometric match to IL_8QYX_169
- Geometric discrepancy: 0.065
- The information below is about IL_8QYX_169
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9NDP|1|7|G|71
9NDP|1|7|U|72
9NDP|1|7|U|73
9NDP|1|7|A|74
9NDP|1|7|G|75
9NDP|1|7|U|76
9NDP|1|7|A|77
9NDP|1|7|C|78
*
9NDP|1|7|G|98
9NDP|1|7|G|99
9NDP|1|7|A|100
9NDP|1|7|A|101
9NDP|1|7|U|102
9NDP|1|7|A|103
9NDP|1|7|C|104
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Large ribosomal subunit protein uL18
- Chain F
- Large ribosomal subunit protein uL30
- Chain I
- 60S ribosomal protein L10
- Chain S
- 60S ribosomal protein L18a
- Chain T
- eL21
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