IL_9NDP_181
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UAU*ACG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_181 not in the Motif Atlas
- Geometric match to IL_5UNE_001
- Geometric discrepancy: 0.1691
- The information below is about IL_5UNE_001
- Detailed Annotation
- Isolated non-canonical cWW contact
- Broad Annotation
- No text annotation
- Motif group
- IL_87720.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
9NDP|1|K|U|110
9NDP|1|K|A|111
9NDP|1|K|U|112
*
9NDP|1|K|A|349
9NDP|1|K|C|350
9NDP|1|K|G|351
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S8
- Chain EE
- Ribosomal protein S11
- Chain x
- eS4
Coloring options: