IL_9NDP_205

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9NDP|1|K|A|628, 9NDP|1|K|U|630, 9NDP|1|K|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_205 not in the Motif Atlas

Homologous match to IL_9H3G_187

Geometric discrepancy: 0.1251

The information below is about IL_9H3G_187

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9NDP|1|K|G|611
9NDP|1|K|U|612
9NDP|1|K|G|613
9NDP|1|K|C|614
9NDP|1|K|C|615
9NDP|1|K|A|616
9NDP|1|K|G|617
*
9NDP|1|K|C|624
9NDP|1|K|G|625
9NDP|1|K|G|626
9NDP|1|K|U|627
9NDP|1|K|A|628
9NDP|1|K|A|629
9NDP|1|K|U|630
9NDP|1|K|U|631
9NDP|1|K|C|632

Current chains

Chain K

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S30

Chain VV

uS12

Chain w

Ribosomal protein S3