IL_9NDP_229

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_229 not in the Motif Atlas

Geometric match to IL_8GLP_246

Geometric discrepancy: 0.0927

The information below is about IL_8GLP_246

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9NDP|1|K|G|1108
9NDP|1|K|C|1109
9NDP|1|K|G|1110
*
9NDP|1|K|C|1123
9NDP|1|K|C|1124

Current chains

Chain K

18S rRNA

Nearby chains

Chain JJ

40S ribosomal protein S27

Chain KK

eS17

Chain q

uS2 (SA)

Chain u

40S ribosomal protein S3a