IL_9NDP_230

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_230 not in the Motif Atlas

Homologous match to IL_9PN5_194

Geometric discrepancy: 0.0695

The information below is about IL_9PN5_194

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

6

Unit IDs

9NDP|1|K|G|1168
9NDP|1|K|G|1169
9NDP|1|K|A|1170
9NDP|1|K|G|1171
9NDP|1|K|U|1172
9NDP|1|K|A|1173
9NDP|1|K|U|1174
9NDP|1|K|G|1175
*
9NDP|1|K|U|1186
9NDP|1|K|G|1187
9NDP|1|K|A|1188
9NDP|1|K|A|1189
9NDP|1|K|A|1190
9NDP|1|K|C|1191

Current chains

Chain K

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain VV

uS12

Chain n

eL41