IL_9NDP_231

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9NDP|1|K|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_231 not in the Motif Atlas

Homologous match to IL_9PN5_195

Geometric discrepancy: 0.1265

The information below is about IL_9PN5_195

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9NDP|1|K|G|1203
9NDP|1|K|A|1204
*
9NDP|1|K|U|1694
9NDP|1|K|A|1695
9NDP|1|K|C|1696

Current chains

Chain K

18S rRNA

Nearby chains

Chain LL

Small ribosomal subunit protein eS26

Chain v

Small ribosomal subunit protein uS5