IL_9NDP_233
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 9NDP|1|K|C|1215, 9NDP|1|K|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_233 not in the Motif Atlas
- Homologous match to IL_9H3G_212
- Geometric discrepancy: 0.1125
- The information below is about IL_9H3G_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.14
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
9NDP|1|K|A|1214
9NDP|1|K|C|1215
9NDP|1|K|C|1216
9NDP|1|K|A|1217
*
9NDP|1|K|U|1681
9NDP|1|K|C|1682
9NDP|1|K|C|1683
9NDP|1|K|C|1684
9NDP|1|K|U|1685
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 4
- mRNA
- Chain FF
- Ribosomal protein S28
- Chain UU
- uS9
- Chain y
- Ribosomal protein S5
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