IL_9NDP_235
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_235 not in the Motif Atlas
- Homologous match to IL_9H3G_214
- Geometric discrepancy: 0.1189
- The information below is about IL_9H3G_214
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_98469.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 37
Unit IDs
9NDP|1|K|G|1235
9NDP|1|K|G|1236
*
9NDP|1|K|C|1521
9NDP|1|K|A|1522
9NDP|1|K|C|1523
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain II
- uS13
- Chain WW
- uS19
Coloring options: