IL_9NDP_245

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_245 not in the Motif Atlas

Geometric match to IL_8CRE_457

Geometric discrepancy: 0.1322

The information below is about IL_8CRE_457

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9NDP|1|K|C|1363
9NDP|1|K|U|1364
9NDP|1|K|G|1365
*
9NDP|1|K|C|1374
9NDP|1|K|G|1375

Current chains

Chain K

18S rRNA

Nearby chains

Chain KK

eS17

Chain LL

Small ribosomal subunit protein eS26