IL_9NDP_260
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UUG*UA
- Length
- 5 nucleotides
- Bulged bases
- 9NDP|1|K|U|1721
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_260 not in the Motif Atlas
- Homologous match to IL_9PN5_226
- Geometric discrepancy: 0.1553
- The information below is about IL_9PN5_226
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 173
Unit IDs
9NDP|1|K|U|1720
9NDP|1|K|U|1721
9NDP|1|K|G|1722
*
9NDP|1|K|U|1812
9NDP|1|K|A|1813
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain V
- Ribosomal protein L23
- Chain VV
- uS12
- Chain n
- eL41
Coloring options: