IL_9NJF_069

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9NJF|1|R1|A|1801, 9NJF|1|R1|C|1816, 9NJF|1|R1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_069 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1043

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9NJF|1|R1|U|1798
9NJF|1|R1|G|1799
9NJF|1|R1|C|1800
9NJF|1|R1|A|1801
9NJF|1|R1|A|1802
9NJF|1|R1|A|1803
9NJF|1|R1|C|1804
*
9NJF|1|R1|G|1813
9NJF|1|R1|G|1814
9NJF|1|R1|A|1815
9NJF|1|R1|C|1816
9NJF|1|R1|G|1817
9NJF|1|R1|U|1818
9NJF|1|R1|A|1819
9NJF|1|R1|U|1820
9NJF|1|R1|A|1821

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA