IL_9NJF_080

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

9NJF|1|R1|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_080 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.1142

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9NJF|1|R1|A|2070
9NJF|1|R1|A|2071
*
9NJF|1|R1|U|2438
9NJF|1|R1|A|2439
9NJF|1|R1|C|2440
9NJF|1|R1|U|2441

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain T

Transfer RNA; tRNA

Chain Y

Probable ATP-binding protein YbiT