IL_9NJF_102

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

9NJF|1|R1|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_102 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.103

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9NJF|1|R1|U|2680
9NJF|1|R1|C|2681
9NJF|1|R1|A|2682
9NJF|1|R1|C|2683
9NJF|1|R1|U|2684
*
9NJF|1|R1|A|2725
9NJF|1|R1|A|2726
9NJF|1|R1|A|2727

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

Large ribosomal subunit protein uL14

Chain 17

Large ribosomal subunit protein bL17

Chain 19

50S ribosomal protein L19

Chain 3

50S ribosomal protein L3