IL_9NJF_127

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9NJF|1|R3|U|244, 9NJF|1|R3|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_127 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.153

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9NJF|1|R3|G|242
9NJF|1|R3|A|243
9NJF|1|R3|U|244
9NJF|1|R3|U|245
9NJF|1|R3|A|246
9NJF|1|R3|G|247
*
9NJF|1|R3|C|277
9NJF|1|R3|G|278
9NJF|1|R3|A|279
9NJF|1|R3|C|280
9NJF|1|R3|G|281
9NJF|1|R3|A|282
9NJF|1|R3|U|283
9NJF|1|R3|C|284

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17