IL_9NJF_146

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9NJF|1|R3|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_146 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1607

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9NJF|1|R3|U|684
9NJF|1|R3|G|685
9NJF|1|R3|U|686
9NJF|1|R3|A|687
9NJF|1|R3|G|688
*
9NJF|1|R3|C|699
9NJF|1|R3|G|700
9NJF|1|R3|U|701
9NJF|1|R3|A|702
9NJF|1|R3|G|703
9NJF|1|R3|A|704
9NJF|1|R3|G|705
9NJF|1|R3|A|706

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sk

Small ribosomal subunit protein uS11