3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUU*AC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_001 not in the Motif Atlas
Geometric match to IL_7A0S_054
Geometric discrepancy: 0.3184
The information below is about IL_7A0S_054
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

9NJV|1|R1|G|2
9NJV|1|R1|U|3
9NJV|1|R1|U|4
*
9NJV|1|R1|A|2900
9NJV|1|R1|C|2901

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 13
Large ribosomal subunit protein uL13

Coloring options:


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