IL_9NJV_010

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_010 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.2301

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9NJV|1|R1|C|239
9NJV|1|R1|C|240
9NJV|1|R1|A|241
9NJV|1|R1|G|242
9NJV|1|R1|U|243
9NJV|1|R1|A|244
9NJV|1|R1|G|245
*
9NJV|1|R1|C|253
9NJV|1|R1|G|254
9NJV|1|R1|A|255
9NJV|1|R1|A|256
9NJV|1|R1|C|257
9NJV|1|R1|G|258

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35