IL_9NJV_013

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_013 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1104

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

9NJV|1|R1|U|293
9NJV|1|R1|A|294
9NJV|1|R1|G|295
*
9NJV|1|R1|C|343
9NJV|1|R1|A|344
9NJV|1|R1|A|345
9NJV|1|R1|A|346
9NJV|1|R1|A|347

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24