IL_9NJV_018

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9NJV|1|R1|G|801, 9NJV|1|R1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_018 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1234

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9NJV|1|R1|G|674
9NJV|1|R1|A|675
9NJV|1|R1|A|676
9NJV|1|R1|A|677
9NJV|1|R1|C|678
*
9NJV|1|R1|G|799
9NJV|1|R1|A|800
9NJV|1|R1|G|801
9NJV|1|R1|A|802
9NJV|1|R1|U|803
9NJV|1|R1|A|804
9NJV|1|R1|G|805
9NJV|1|R1|C|806

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 4

Large ribosomal subunit protein uL4