3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGCGAAG*UGGAG
Length
13 nucleotides
Bulged bases
9NJV|1|R1|C|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_045 not in the Motif Atlas
Homologous match to IL_5J7L_288
Geometric discrepancy: 0.1237
The information below is about IL_5J7L_288
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

9NJV|1|R1|C|1208
9NJV|1|R1|U|1209
9NJV|1|R1|G|1210
9NJV|1|R1|C|1211
9NJV|1|R1|G|1212
9NJV|1|R1|A|1213
9NJV|1|R1|A|1214
9NJV|1|R1|G|1215
*
9NJV|1|R1|U|1234
9NJV|1|R1|G|1235
9NJV|1|R1|G|1236
9NJV|1|R1|A|1237
9NJV|1|R1|G|1238

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 20
Large ribosomal subunit protein bL20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3439 s
Application loaded.