IL_9NJV_071

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9NJV|1|R1|A|1801, 9NJV|1|R1|C|1816, 9NJV|1|R1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_071 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1059

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9NJV|1|R1|U|1798
9NJV|1|R1|G|1799
9NJV|1|R1|C|1800
9NJV|1|R1|A|1801
9NJV|1|R1|A|1802
9NJV|1|R1|A|1803
9NJV|1|R1|C|1804
*
9NJV|1|R1|G|1813
9NJV|1|R1|G|1814
9NJV|1|R1|A|1815
9NJV|1|R1|C|1816
9NJV|1|R1|G|1817
9NJV|1|R1|U|1818
9NJV|1|R1|A|1819
9NJV|1|R1|U|1820
9NJV|1|R1|A|1821

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA