IL_9NJV_075

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_075 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1486

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NJV|1|R1|U|1851
9NJV|1|R1|U|1852
9NJV|1|R1|A|1853
9NJV|1|R1|A|1854
9NJV|1|R1|U|1855
9NJV|1|R1|U|1856
9NJV|1|R1|G|1857
9NJV|1|R1|A|1858
9NJV|1|R1|U|1859
9NJV|1|R1|G|1860
*
9NJV|1|R1|U|1882
9NJV|1|R1|U|1883
9NJV|1|R1|G|1884
9NJV|1|R1|A|1885
9NJV|1|R1|U|1886
9NJV|1|R1|C|1887
9NJV|1|R1|G|1888
9NJV|1|R1|A|1889
9NJV|1|R1|A|1890
9NJV|1|R1|G|1891

Current chains

Chain R1

23S ribosomal RNA

Nearby chains