IL_9NJV_092

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

9NJV|1|R1|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_092 not in the Motif Atlas

Geometric match to IL_5LYS_008

Geometric discrepancy: 0.3906

The information below is about IL_5LYS_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9NJV|1|R1|U|2401
9NJV|1|R1|U|2402
9NJV|1|R1|C|2403
*
9NJV|1|R1|G|2414
9NJV|1|R1|G|2415

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35