3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
9NJV|1|R1|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_107 not in the Motif Atlas
Homologous match to IL_5J7L_350
Geometric discrepancy: 0.1179
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9NJV|1|R1|G|2737
9NJV|1|R1|A|2738
9NJV|1|R1|U|2739
9NJV|1|R1|A|2740
9NJV|1|R1|A|2741
9NJV|1|R1|G|2742
*
9NJV|1|R1|C|2762
9NJV|1|R1|G|2763
9NJV|1|R1|A|2764
9NJV|1|R1|A|2765
9NJV|1|R1|A|2766
9NJV|1|R1|C|2767

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 13
Large ribosomal subunit protein uL13
Chain 36
50S ribosomal protein L36
Chain 6
Large ribosomal subunit protein uL6

Coloring options:


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