3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
9NJV|1|R3|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_128 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.1423
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

9NJV|1|R3|G|147
9NJV|1|R3|G|148
9NJV|1|R3|A|149
9NJV|1|R3|U|150
9NJV|1|R3|A|151
9NJV|1|R3|A|152
9NJV|1|R3|C|153
*
9NJV|1|R3|G|168
9NJV|1|R3|C|169
9NJV|1|R3|U|170
9NJV|1|R3|A|171
9NJV|1|R3|A|172
9NJV|1|R3|U|173
9NJV|1|R3|A|174
9NJV|1|R3|C|175

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain st
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2533 s
Application loaded.