3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_138 not in the Motif Atlas
Homologous match to IL_5J7L_023
Geometric discrepancy: 0.1507
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

9NJV|1|R3|G|450
9NJV|1|R3|A|451
9NJV|1|R3|A|452
9NJV|1|R3|G|453
9NJV|1|R3|G|454
9NJV|1|R3|G|455
*
9NJV|1|R3|C|477
9NJV|1|R3|A|478
9NJV|1|R3|U|479
9NJV|1|R3|U|480
9NJV|1|R3|G|481
9NJV|1|R3|A|482
9NJV|1|R3|C|483

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain sp
Small ribosomal subunit protein bS16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2977 s
Application loaded.