IL_9NJV_138
3D structure
- PDB id
- 9NJV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex (bL33 absent)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJV_138 not in the Motif Atlas
- Homologous match to IL_5J7L_023
- Geometric discrepancy: 0.1507
- The information below is about IL_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70801.1
- Basepair signature
- cWW-cWW-L-R-tWW-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9NJV|1|R3|G|450
9NJV|1|R3|A|451
9NJV|1|R3|A|452
9NJV|1|R3|G|453
9NJV|1|R3|G|454
9NJV|1|R3|G|455
*
9NJV|1|R3|C|477
9NJV|1|R3|A|478
9NJV|1|R3|U|479
9NJV|1|R3|U|480
9NJV|1|R3|G|481
9NJV|1|R3|A|482
9NJV|1|R3|C|483
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sp
- Small ribosomal subunit protein bS16
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